Abstract: The atmospheric general circulation model (GCM) that underlies the MERRA-2 reanalysis includes a suite of physical parameterizations that describe the processes that occur in the planetary boundary layer (PBL). The data assimilation system assures that the atmospheric state variables used as input to these parameterizations are constrained to the best fit to all of the available observations. Many studies, however, have shown that the GCM-based estimates of MERRA-2 PBL heights are biased high…